NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold M3t2BS2_1270976

Scaffold M3t2BS2_1270976


Overview

Basic Information
Taxon OID3300002139 Open in IMG/M
Scaffold IDM3t2BS2_1270976 Open in IMG/M
Source Dataset NameM3t2BS2 (117f)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)990
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)65.3915Long. (o)23.49916667Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013762Metagenome / Metatranscriptome268Y

Sequences

Protein IDFamilyRBSSequence
M3t2BS2_12709762F013762N/AAGYGGDKAIFGYGKTGTGSTNITNITNLVSNTGVVATDTAGVGTSRSDLAAAGYGGDKAIFGYGSTPTRVSMTNKVSNTGVVSSDNTGVGTARKQLAAAEFSI*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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