NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold M2t2BS2_10655714

Scaffold M2t2BS2_10655714


Overview

Basic Information
Taxon OID3300002144 Open in IMG/M
Scaffold IDM2t2BS2_10655714 Open in IMG/M
Source Dataset NameMarine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS2 (113f)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3693
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)57.305Long. (o)20.0745Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029774Metagenome / Metatranscriptome187Y
F076122Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
M2t2BS2_106557144F029774GAGMARSISVKVPTSLLIQQIEERIAQIDKDIEEYPAKRAAYDKASEAYTKEVAEFMADFVVKNHKKIRSGYDAELIRLQAYGNRVDLTFYTDAIPNFPKRPEAPESPNQKESFGREYVSRKSLLEKNLRILKMTSQEEVNASTYGAIMEII*
M2t2BS2_106557149F076122N/AMTKHEVVNEIFEYLEQRRTDLSNEMSAVAYESNDYKTFDSMYMVYDHLMAKLEDDYR*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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