NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold S2t7BSb_10285802

Scaffold S2t7BSb_10285802


Overview

Basic Information
Taxon OID3300002145 Open in IMG/M
Scaffold IDS2t7BSb_10285802 Open in IMG/M
Source Dataset NameS2t7BSb (114f)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6240
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)57.305Long. (o)20.0745Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032870Metagenome / Metatranscriptome179N

Sequences

Protein IDFamilyRBSSequence
S2t7BSb_1028580211F032870GGAGGMSHRDAEELAAEIAYMQDDPSFHPRYNPKGKKDTNDLEARIERLEFRNEKLHKFNSKLIDEVRKLRKQLKTVVDEYRNKGAL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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