Scaffold JGI24540J26637_10151208

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24540J26637_10151208

Scaffold JGI24540J26637_10151208

Overview

Basic Information
Taxon OID	3300002153 Open in IMG/M
Scaffold ID	JGI24540J26637_10151208 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from the Norwegian Sea - 20m ARK-7M Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	618
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas mendocina	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Norwegian Sea, Atlantic Ocean
Coordinates	Lat. (^o)	73.0188	Long. (^o)	9.8566	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074568	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24540J26637_101512081	F074568	N/A	LRSGQVTAVKFASEGIVASSSTDGSTKFWDLGTGQETEKTAEAVPEGFTFPKEGGTEEKRINSYVVAAKGKTLCIFKAADEAETAEAPKVEAAEAEAEETAAVAFFQCASEIQAFDVSELERSHIAVGCADGQVLHLQAAVLLT*

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