NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24766J26685_10000172

Scaffold JGI24766J26685_10000172


Overview

Basic Information
Taxon OID3300002161 Open in IMG/M
Scaffold IDJGI24766J26685_10000172 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16804
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (76.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002489Metagenome / Metatranscriptome554Y
F021111Metagenome / Metatranscriptome220Y
F021757Metagenome217Y
F044483Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
JGI24766J26685_1000017214F021111GGAMENSKDRLNHIETDGGTIKETDAMGREKFWEDLGRPND*
JGI24766J26685_1000017215F002489AGGAMTENNEQPQNLEDNLPMVNYIMLHRIYDLLTLIANKLVGPEDVSKMVEYHNQGYLLGPAPSFTPGYEDNDGSK*
JGI24766J26685_1000017217F044483AGGAGVKKIYADQIAYKMNRAEKNVYEDVSKATEALKWMVEKIESYLNKCLNVEDGQCNLSWKHDECKMLMDILYDLTENVKYKESVWRFDPKQEHLWD*
JGI24766J26685_1000017229F021757N/AMMTRKDYVKTADILSSYKDLIGDEFTYHDLVDDFASMFAEDNSQFNADKFLEACNK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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