Basic Information | |
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Taxon OID | 3300002161 Open in IMG/M |
Scaffold ID | JGI24766J26685_10000242 Open in IMG/M |
Source Dataset Name | Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14649 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (85.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Sandusky Bay, Ohio, USA | |||||||
Coordinates | Lat. (o) | 41.474889 | Long. (o) | -82.854137 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000264 | Metagenome / Metatranscriptome | 1424 | Y |
F043941 | Metagenome | 155 | Y |
F044495 | Metagenome / Metatranscriptome | 154 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI24766J26685_1000024213 | F043941 | AGG | MPSYTVYHGKFICHECKVEVTSLRLYAETKEMTWMCREKHLSKVYLGKRKKKDFDGEE* |
JGI24766J26685_100002425 | F044495 | AGGA | MNKIEXTXXAXAVXGXVGFGFAXAVLKGIPEAFDWELDEEENYE* |
JGI24766J26685_100002426 | F000264 | AGAAG | MGAKLYTSEVYMRKRYLVDKKTPEEIAKECGSSVETIYVYLAKFGLRKSKR* |
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