NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24820J26691_1041603

Scaffold JGI24820J26691_1041603


Overview

Basic Information
Taxon OID3300002176 Open in IMG/M
Scaffold IDJGI24820J26691_1041603 Open in IMG/M
Source Dataset NameMarine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)951
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)0.0Long. (o)-158.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015102Metagenome / Metatranscriptome257Y
F027536Metagenome194Y
F029123Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
JGI24820J26691_10416031F029123N/AMSYEVWFGKDGKWFGYHSFKHRMDAVRYELRYLKMFPNLTVELRRREHAS*
JGI24820J26691_10416032F027536GGAGGMRVSPDGWRYKVTPIDRVINDCKRRADDAWWDGNDEEARLHEQEQKLYEKDREEGVEWVPNF*
JGI24820J26691_10416033F015102GGAMQRESDYAEDKNAPFDDVTHWVGNLPSKDTDSNERPIKRYSWWQTKSNILRKKLGVETKRED*
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