Scaffold JGI24141J26756_1006161

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24141J26756_1006161

Scaffold JGI24141J26756_1006161

Overview

Basic Information
Taxon OID	3300002179 Open in IMG/M
Scaffold ID	JGI24141J26756_1006161 Open in IMG/M
Source Dataset Name	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 004-21A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3595
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma panaciterrae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	Barrow, Alaska, USA
Coordinates	Lat. (^o)	71.270939	Long. (^o)	-156.810374	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F063193	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24141J26756_10061615	F063193	N/A	MKKNLLLGFLILFVLSTTAFAGLSDPKKENEKPAVSRENKLSDEEISRMNKRAEIDNLSGSNLLNKEKSSSNDLKATKQIYVEGEHHRHGGYYLYGGGLLLVIILVIILV*

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