NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24141J26756_1090600

Scaffold JGI24141J26756_1090600


Overview

Basic Information
Taxon OID3300002179 Open in IMG/M
Scaffold IDJGI24141J26756_1090600 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 004-21A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)650
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Chloroflexineae → Oscillochloridaceae → Oscillochloris → Oscillochloris trichoides(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow, Alaska, USA
CoordinatesLat. (o)71.270939Long. (o)-156.810374Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038291Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
JGI24141J26756_10906001F038291AGGAGMIEKLFRSFRSPFSATSREDFTLEEEVALYRHRAEVALEEERYNDALVFLAKILRLNPYDLQARMTVAHTYHYALQEPTKALLTYEKVVAASGYDESNSYSVAAREGXRELEGXLETAAXXLXDLVDEEESSEDTKGRAHIV

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