NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24721J26819_10211491

Scaffold JGI24721J26819_10211491


Overview

Basic Information
Taxon OID3300002182 Open in IMG/M
Scaffold IDJGI24721J26819_10211491 Open in IMG/M
Source Dataset NameHot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)751
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.611006Long. (o)-110.440182Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086602Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
JGI24721J26819_102114911F086602N/APFTFDKHADLPPDQRPAYRLADTEMTFNVWEDKRLVDTVTLRAIILHDPQGQTPAERWPVVLLTPDREREARALLNEQGDHWGQEFAHRIGRHDLDSDILPTGYVLKTTRDGQGELQREVEFDNTAFFLSAWLHCLVFNLMTLFAQALGGEYTKLWAGTLLRKFIRRPATLYLIGKELHVVFDPFPGQDELQPLLDKLNDQRVALPWLNHLIVQLTIAHDKPVYPLTEPEKRKRLFGNG*
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