NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LCLV3ORF_1002750

Scaffold LCLV3ORF_1002750


Overview

Basic Information
Taxon OID3300002191 Open in IMG/M
Scaffold IDLCLV3ORF_1002750 Open in IMG/M
Source Dataset NameLCL_V3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2510
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Red Sea

Source Dataset Sampling Location
Location NameRed Sea
CoordinatesLat. (o)21.34383Long. (o)38.07683Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038914Metagenome165Y
F076631Metagenome118Y
F104018Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
LCLV3ORF_10027501F076631N/AEVIVKRIREQTLIDFEEFMLPQARENFQKFWSGAMGNAAKELKKSEEGGQLALMSNMASELSGQPWYVQAAASKLMPIIQEAATKEGKPKPKQDLGMGLRK*
LCLV3ORF_10027503F104018AGGAVVQLVKILSRGEGVIKDVTDGQLGEAFSTLSSNAVDMIGSDAGRKTLVGASLVAMAGAFARRQFPNLKLGGSKLYFRL*
LCLV3ORF_10027507F038914N/AMSLGPSQSILRVKDGYIYGWSGSKALTSSAVNLLDYTNPPSFYLTRV
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