NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold metazooDRAFT_1303180

Scaffold metazooDRAFT_1303180


Overview

Basic Information
Taxon OID3300002203 Open in IMG/M
Scaffold IDmetazooDRAFT_1303180 Open in IMG/M
Source Dataset NameFreshwater microbial communities from San Paulo Zoo lake, Brazil - MAR 2013
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)711
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake → Freshwater Microbial Community From Sao Paulo Zoo Lake, Brazil

Source Dataset Sampling Location
Location NameSao Paulo, Brazil
CoordinatesLat. (o)-23.651072Long. (o)-46.620675Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004115Metagenome / Metatranscriptome452Y
F017667Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
metazooDRAFT_13031801F017667AGGAGMSNYLDDYVSVQDRLKEFINAYPDYRIKSHVLEESLIPTCDVYIVKVELYRTEADAAAWTTGLSSESKSKQYALELAETGALGRALNLAGYFAKPAQTPKKPIQTTKPALAEFVKEQRPN
metazooDRAFT_13031802F004115N/AIRITISSGTQLSWLSADFLLQKIGMTLSLIRNTNQSQWCDYCKTRYGQLKDGTWHHRAQVPAVWKVVSETPTRKGITRFYCQECANEAQKWPDGTFWTLKEQLDYAISNFATQEKLNVELP*
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