NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold M1t2FKB2103N_1958251

Scaffold M1t2FKB2103N_1958251


Overview

Basic Information
Taxon OID3300002230 Open in IMG/M
Scaffold IDM1t2FKB2103N_1958251 Open in IMG/M
Source Dataset NameMarine microbial communities from the Baltic Sea - M1t2 FKB2 (103N)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterKarolinska Institutet
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34770
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (82.69%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.133Long. (o)10.0Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012624Metagenome279N
F012723Metagenome278Y
F015934Metagenome / Metatranscriptome251N
F101912Metagenome102N

Sequences

Protein IDFamilyRBSSequence
M1t2FKB2103N_195825124F015934N/AMELETMRQTKELIFSGEHPRLITGASYSIYAIALITGISNATLYRRLKGRDEITDWDITPAHERNPERYGNKGRDSVGYSRLETATERLSAEWLRLSI*
M1t2FKB2103N_195825125F012624AGGAGGMLNNYKGNSAHLKALKLARIEKHIADAVVYLSLSLGVVAMFTFLNWAMIARYGA*
M1t2FKB2103N_195825126F101912GGGGGMQALAVFQNDRLAPVSYIANIRGRGIKHIQTLAYRFADANGFKYSHITYYKHRDEYSTIAAKQSFPYYKEV*
M1t2FKB2103N_195825127F012723N/AVDKMSDDDIKAYFDGSNITLAELSAMTGKSIKQLKTILMGV*
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