NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KVRMV2_100026318

Scaffold KVRMV2_100026318


Overview

Basic Information
Taxon OID3300002231 Open in IMG/M
Scaffold IDKVRMV2_100026318 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Santorini caldera mats, Greece - red mat
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10069
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (83.87%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location
Location NameSantorini caldera, Greece
CoordinatesLat. (o)36.5Long. (o)25.45Alt. (m)Depth (m)336
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003677Metagenome / Metatranscriptome474Y
F003834Metagenome / Metatranscriptome466N
F014069Metagenome / Metatranscriptome266N
F018266Metagenome / Metatranscriptome236N
F069444Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
KVRMV2_10002631813F069444AGGAGVKRNLIVYKVDYVNTKEDYSISTGKFVRTKRIVMTPDEVDTNR*
KVRMV2_10002631815F018266AGGAGGVFRVIIENKFRENPINLSRAVKLLYNQDFTGSIRKENLLWWKKYFLKVIHLPILYPKRGYIQIVKIYRDKKPSIRVVTIPSGSDKRELLVLNKIYGGNNG*
KVRMV2_10002631819F014069AGGAGGMETVKAPINERVATKVMPLTKWFVEQYFQTYELMSSDPRFKALPPYNQTSCIATVIIATNNALDKSREARKSAETLQDISKATEERKAVNE*
KVRMV2_10002631820F003834AGGAMSSSKTPIRQDEKDYLDHFIETKYDDRKNILKTEMQDTIDKEAEDNFEAFKDKLKITKMHDEVRTLYEDHKKFANEMDSILLEKKAKLDNAINTLEDKLDQWKKIRKWKNDIERSLIKEPDELDRLLKKLCHEETERDYYGGPRGKALQMLDMSKEYCKNLLNAGQSLTTVWGVLNTEMSKEKINTNTIPKPEFLAITK*
KVRMV2_10002631822F003677N/AMVDKNLYYFEADVGKKVYEIEHETTYVTKWQVVAEDRDQAFDIWLENSKEDFNTENSASNNCVCSYVKDYGQMGDTKEIAKIKYDKEMDEVYAE*
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