Basic Information | |
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Taxon OID | 3300002231 Open in IMG/M |
Scaffold ID | KVRMV2_100316476 Open in IMG/M |
Source Dataset Name | Marine sediment microbial communities from Santorini caldera mats, Greece - red mat |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1069 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc |
Source Dataset Sampling Location | ||||||||
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Location Name | Santorini caldera, Greece | |||||||
Coordinates | Lat. (o) | 36.5 | Long. (o) | 25.45 | Alt. (m) | Depth (m) | 336 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008925 | Metagenome | 326 | Y |
F012581 | Metagenome | 279 | N |
F013187 | Metagenome | 273 | Y |
Protein ID | Family | RBS | Sequence |
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KVRMV2_1003164762 | F008925 | AGGAG | MTTKSKPTINTVTLNLINKLKKIDDTINEGAWEYIHLGDIIRLQDAYQEAVNHFDLRKEGGVHDYGADKGKYQQFWHSDYVCWSDPKAYDPSKVEEEDDE* |
KVRMV2_1003164765 | F012581 | AGGAG | MAKYTLYAKRVYYYRKDINAQDMKSAEKRGADYEADDNPERLFEPSGTEFYITSIEESDDEG* |
KVRMV2_1003164766 | F013187 | AGGAG | MPTKKIKKKPRRNTWVWIYGDEMLEIWEHFGIDFPNPDDRIKLKFVKYETKEMQDG* |
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