NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20169J29049_11438114

Scaffold JGI20169J29049_11438114


Overview

Basic Information
Taxon OID3300002238 Open in IMG/M
Scaffold IDJGI20169J29049_11438114 Open in IMG/M
Source Dataset NameNasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3949
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000046Metagenome3442Y
F030477Metagenome185Y
F095677Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
JGI20169J29049_1143811410F000046AGGAMLLDDLKERREYSHLKEEALNSTMWRARFGKGFGPPPPAHQT*
JGI20169J29049_114381146F030477GAGVLKIWENYITELYDRANRPQTLEVEPEEEVDTEKKGPYIFRIEEEKAIKELRN*
JGI20169J29049_114381147F095677GGAGGLKIMTKLINTIYEAGEWPKDFTEFKMIALKYKPQETKCNDHRTVSLIARTTKIVTKILTRKIEKKIEGVLGEVEFGFRR*
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