Basic Information | |
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Taxon OID | 3300002242 Open in IMG/M |
Scaffold ID | KVWGV2_10007501 Open in IMG/M |
Source Dataset Name | Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2801 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (81.82%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc |
Source Dataset Sampling Location | ||||||||
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Location Name | Kolumbo Volcano, Greece | |||||||
Coordinates | Lat. (o) | 36.5 | Long. (o) | 25.45 | Alt. (m) | Depth (m) | 494 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F021207 | Metagenome | 220 | Y |
F105326 | Metagenome | 100 | Y |
F105336 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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KVWGV2_1000750110 | F021207 | AGGAG | MSKRFKQVNIQHFATLVQEIDVSKYTQKEYVEIVEELYMSIFRHNTNGDYVIPTMPNEEGNWKVHKSSATKEEVMELIKEGRVTWNKDVI* |
KVWGV2_1000750111 | F105326 | AGAAGG | MEQRRNLTPTQHWELHQGLWRMLGCDMKLKHKDRTKIIYVYKKRNIQYTYSALGFIEEKRYANKKNKKET* |
KVWGV2_100075018 | F105336 | GGAG | MKLQQRQITRVEQILSDLERKVEQMEQQDYITFDLEKDLRSLQAMLDDLREEIENE* |
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