NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KVWGV2_10744284

Scaffold KVWGV2_10744284


Overview

Basic Information
Taxon OID3300002242 Open in IMG/M
Scaffold IDKVWGV2_10744284 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1443
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location
Location NameKolumbo Volcano, Greece
CoordinatesLat. (o)36.5Long. (o)25.45Alt. (m)Depth (m)494
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058538Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
KVWGV2_107442841F058538N/ATVINRRRLHDLLTWVNRKYHLDYEVVQENRDVFYVIFHDLNIKQTVAIQKQIKGNSQPEHFDMH*
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Institute for Fundamental Biomedical Research
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