NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29579_100587

Scaffold B570J29579_100587


Overview

Basic Information
Taxon OID3300002272 Open in IMG/M
Scaffold IDB570J29579_100587 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2474
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046201Metagenome151Y
F053094Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
B570J29579_1005872F046201GGAMRSEAFGQIGLLPVEFYGLEVDEYLLLRKGYIEKVKTESILLRFQTALICEALIGKGNGARFVMDSWQLESKTDLDQEQIRALLKAKKEREALRRLKTKQNG*
B570J29579_1005874F053094N/AMADATTISGSVMFIEYSDSPSSAKKSAVCQSEGSFDGSRNVVSDETNCGTLKVLGPQNNRFTLNAVVDTVPDANEASFNDFQTLYANNTKKYWHLTDSAETIYHGGYGWISALGQQNVSGQTAKFTMTIEIEGDIDTEPAS*
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