NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29603_107005

Scaffold B570J29603_107005


Overview

Basic Information
Taxon OID3300002297 Open in IMG/M
Scaffold IDB570J29603_107005 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 17AUG2012 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)703
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066562Metagenome126N

Sequences

Protein IDFamilyRBSSequence
B570J29603_1070051F066562GGAMTEKKLLERRFVSQNRNPNIISVPIKFIKYSNQFNKHNWLSLKVRSERDNLYLNDNLAKRRLKTLPDIDNLFNPIIVWASDYLICIFGNKRLKTAIDKGYTHIDCLIYNNFEQAVSIGNSIWNTFKQYGLSKVDYLLTTDNQAILNIDKYMVEEKQFIDTYATHQQVLIQEALKSNEDIMETGCGYYSTPLLVEIAKAKGIKLISFVQE
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