Scaffold JGI24891J29808_1001155

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24891J29808_1001155

Scaffold JGI24891J29808_1001155

Overview

Basic Information
Taxon OID	3300002301 Open in IMG/M
Scaffold ID	JGI24891J29808_1001155 Open in IMG/M
Source Dataset Name	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI co-culture FSW-F8
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5962
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location Name	Brandenburg, Germany
Coordinates	Lat. (^o)	53.1666	Long. (^o)	13.0333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050109	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24891J29808_10011553	F050109	GGA	MLWPAHGTAVRLASRHAEQIRKGFKKAFNADDIVEKWFHSHIGSTSTTTQQARDWAKASITPDKKALLDSLKPVYADGWVLGTVAGQYMLRGLQKAPSVGLIDWNTWKPGNQAASALINPKGGLQGLLDRRNIVIDGISQTKIDRIGTVLGDALAQGLTPRAVSIMVDQVVNDPQQALVIAQTEMSRAVSVASRNLYQDSGVSQVEWLVAEGCDDCQENADASPIGIDETFPSGDTEPPAHPNCMCSLAPYVDTSTLGE*

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