Scaffold JGI24213J29975_1004158

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24213J29975_1004158

Scaffold JGI24213J29975_1004158

Overview

Basic Information
Taxon OID	3300002341 Open in IMG/M
Scaffold ID	JGI24213J29975_1004158 Open in IMG/M
Source Dataset Name	Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - D_52min_Anaerobic (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	510
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. 45MFCol3.1	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Source Dataset Sampling Location
Location Name	Madison, WI, USA
Coordinates	Lat. (^o)	43.078418	Long. (^o)	-89.386482	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083600	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24213J29975_10041581	F083600	N/A	RDSNIMSSKAVVPAIQTMKIIYGSHGRQNILPYHYLGMVYRTPWRFWYSNSQVFRWFSRFMVLAVGASIYLPLKGVDLSYTPYTIVHHQLDHKFGDWIEEMRYPVDQKRVDEYKKAHGLQ

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