 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002376 Open in IMG/M |
| Scaffold ID | JGI24505J29691_1019401 Open in IMG/M |
| Source Dataset Name | Biogas fermentation microbial communities from Germany - Plant 4 RNA2 (Metagenome Metatranscriptome) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1853 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin035 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Bielefeld, North Rhine-Westphalia, Germany | |||||||
| Coordinates | Lat. (o) | 52.0385 | Long. (o) | 8.4956 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013091 | Metagenome / Metatranscriptome | 274 | Y |
| F031881 | Metagenome / Metatranscriptome | 181 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI24505J29691_10194012 | F031881 | GGAGG | MNSYQFTINKKLSTIRIGENKFKFAIDKSGATTINITQDKIEDVIYSVFDNSEYLDLVRIITNIKGTQQVPKIFLQGANGVGNGLVDSQGCGFVDTTDLVLTDVPISVTKKRMGLELCLDDLVNTTLEVHISSGARNENLDIEDALLAYFTQVLRKNIQNYVFADSVDGILNKILTSGTAVTPTASSDLGKLYDLFEALPADWKNSTEANPIVFISPNLMTGVRSEIITSSAPITSSIEVVNNRFNLPLTNAVVVATPYLTGTSAVAGIQNYLFLGTDLESDFADTRIWYSNDNETIRFSAHLYLGTAVADITDFVKYTV* |
| JGI24505J29691_10194013 | F013091 | AGGAGG | MICKLTNGISLKDCDTPGGVSESYFINIEDVDTLTVTEFQVSDLTLKSTATAYKIAFEPQTSNFASNAVGSVENSSAAFEQTCEIKINRIDNNVLKQIDALTKGIGRHMVIIKKADGTYELYFHEGGAKFVANYTTGTALEDASGVTLTATHRQTSNMLIVSETVMETLSIAEETV* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |