NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24502J29692_10078402

Scaffold JGI24502J29692_10078402


Overview

Basic Information
Taxon OID3300002378 Open in IMG/M
Scaffold IDJGI24502J29692_10078402 Open in IMG/M
Source Dataset NameBiogas fermentation microbial communities from Germany - Plant 3 RNA1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)727
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location
Location NameBielefeld, North Rhine-Westphalia, Germany
CoordinatesLat. (o)52.0385Long. (o)8.4956Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074777Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
JGI24502J29692_100784021F074777N/AIDDYEDGWPIEETLKEWAKHADTSDTDSMAEFLTIATGEEWTVKAFTGYSQGDYCEVVYCVNHHTPERINEIGKFWLGCGTEFCIDGCHGYFVIDELRWEEGDKLRQYLADCYGCKPDELEIYLYDGVETVTKYKKMD*
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