Scaffold B570J29605

Basic Information
Taxon OID	3300002393 Open in IMG/M
Scaffold ID	B570J29605_1000092 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002393 Open in IMG/M

Scaffold ID

B570J29605_1000092 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13199
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (25.93%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13199

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (25.93%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F042157	Metagenome	158	N
F049410	Metagenome	146	N
F068425	Metagenome	124	Y
F071219	Metagenome	122	N
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
B570J29605_100009210	F049410	GGA	MTRGTRYTNGKEVITFVKIDFIVIGGRKIDHVYFRRKDKVDLILPLLEWNLKGKFEWEIIN*
B570J29605_100009212	F041191	GGA	MKLLYKPKRLTCDIIIPNLEKSDGVQKVIGFSRGWHHWNSIRLGIRKEENYCVLYFYAYIKGQRIIQRIGRYQIGEVVKCALSWGYYIECKANNGYAFRVAPKCSFPIGYLLYPYAEKDGVEGIEVPLNIEIMNLKID*
B570J29605_100009214	F102493	N/A	LYLIIFILYLPKFKTNNIMETTLTLHWEYEETDRENNISGGWVLTDITNGNTPVYLSPKLEQLLNEELDPENF*
B570J29605_10000924	F071219	N/A	MIHPHHPDNSILVIITSVIIQAGVWTSDWFGNINLTGIYDTIYDFAKLAALVVSMWASYRVAKKNKND*
B570J29605_10000926	F068425	N/A	MSIHQKRLLIGLTNGINNNNMKPQHQLITFAALCLLLIIGLNHCAKDKPKTIPFDYKSEAEMMKKQFGIEQAILLNQLEAANRRLQTANNAKDSIRKRELSLTNTNIALMKKLRDRLPKECDTVFVLCDEIINVKDSSYAALFNAFQLCADGSNIKDSLITNYKAENVTDSTLLVISKQETKQQRRGKVAAWCVGGAMFILWLVVGLK*
B570J29605_10000928	F042157	N/A	MNLKQKYRSPDNKQLKKIADYLIYVLLPFIQTSLALAETQGLISLKQAFWGGLAATFLLINTKFLTKFTTEKPTRNGNIDGDGC*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J29605_1000092

Overview

Ecosystem & Geography

Associated Families

Sequences