NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29605_1000136

Scaffold B570J29605_1000136


Overview

Basic Information
Taxon OID3300002393 Open in IMG/M
Scaffold IDB570J29605_1000136 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11234
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041191Metagenome160Y
F062749Metagenome130Y
F102493Metagenome101N

Sequences

Protein IDFamilyRBSSequence
B570J29605_10001361F041191N/AMKLLWKPTKLTCEFIVPDIDKSEGVQKVIGFSKGWHHYNSIRLGIRKEEDYCVLYFYAYIKGQRIIQRLGRYQIGELVKCRLHWGYYIECKANDGYAFRVAPKCSFPIGYLLGNYAEKDGVEGVQVPIEIQINNLKIK*
B570J29605_10001362F062749N/AMKTKSSLILWAVAALFMSFWAVKFAMTGVNYDNSEFITFTLSLCASLTSAVCGAGFMQQWLKK*
B570J29605_10001363F102493N/AMTTTLTLTLHFDYENDDRENNIRGGWVLTDITNGKTSVHLSPKLEQLLNEELDPENL*
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