NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29629_1004469

Scaffold B570J29629_1004469


Overview

Basic Information
Taxon OID3300002396 Open in IMG/M
Scaffold IDB570J29629_1004469 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13OCT2010 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1119
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Sclerotiniaceae → Botrytis → Botrytis cinerea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057130Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
B570J29629_10044691F057130N/ANPLLKLADFKAEYKLNKALQRITNCMAGTLQANGQPMFPNEPGTLLNDIIRDYNLQPAEAPPPYDFGLDNHVTIEAIKAECTRRNVSFFDVTNSHGNRQFYDITYGAEPQPGQEPDLNPWREYSRPETADKNLELAQVVCHGDSTTIVDWTTTMEELRKLFLARVYTNDMAKCCLMHLVQKYHPEQRILLRTMTANQIATYLLQLDSNRDKRTLHRQQLFRIMRSPEEDLAAALARVQLSIDAIYPANDPAYAVHRSNTLRAAILSFCSDPVAQAVMELIRSRQSECLPLTDEEVKEYAIKFEEYTHCKPVENLAFGRKVNNMPVATFIQLNSSEVTANTIYPAYPAYPSGFDNPYPAYQTFEQVRHPNVGH
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