NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29625_1018969

Scaffold B570J29625_1018969


Overview

Basic Information
Taxon OID3300002400 Open in IMG/M
Scaffold IDB570J29625_1018969 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26AUG2009 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)519
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004315Metagenome / Metatranscriptome444Y

Sequences

Protein IDFamilyRBSSequence
B570J29625_10189691F004315N/AMKVASDXLLLLCLHDFGLRVTVEVGQASACLYSEARLYKGPSQSTLPQLAATRSTGNISVRTQKVNHSNTRGLVSSLFFSRSEIT
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