NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29611_1000014

Scaffold B570J29611_1000014


Overview

Basic Information
Taxon OID3300002401 Open in IMG/M
Scaffold IDB570J29611_1000014 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26JUN2009 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19242
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (66.07%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008943Metagenome / Metatranscriptome325Y
F014121Metagenome / Metatranscriptome265Y
F018913Metagenome / Metatranscriptome232Y

Sequences

Protein IDFamilyRBSSequence
B570J29611_100001411F018913GGTGGMTNQQRAEELLKVICKSEAHNTAWMLQEVLQQLRKQLSGTNKIDFTDELDVMFNAGWDECLKEIDAICDELLEL*
B570J29611_100001412F014121AGGAGMTNTAYQIWETFKAELIVEPTDDMKEALASSIRVISSIIHRDGVLANEPWLTHTAQELNEIADDMEAL*
B570J29611_100001414F008943GGAMKNFNEITWAVLSFFFIIIVAGAIITYDAQQQRVLFQQTYNKNLECRQALKDQTVGRVNEICGDVPAIGAFVK*
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