NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29032_109843243

Scaffold B570J29032_109843243


Overview

Basic Information
Taxon OID3300002408 Open in IMG/M
Scaffold IDB570J29032_109843243 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1599
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F002406Metagenome562Y
F009266Metagenome / Metatranscriptome320Y
F099190Metagenome103N

Sequences

Protein IDFamilyRBSSequence
B570J29032_1098432431F002406N/ARAMSDRLRDELSSEYDDDTKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDDKE*
B570J29032_1098432433F002398AGGMMLPLLHIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDYPRVNIIEKSKFDFFAYLDTIGIEHTQVGSYYFFNRKPK*
B570J29032_1098432434F009266AGGAMTDKERKILDKEIQYLCEQQDRVKAIREYTNINPGYTFQREAETIESLYKSVLEHRKHDKSMYFSAATSGWYVVYLRDKKKYKEGEKFRIKIYHTFVWSDNLE*
B570J29032_1098432435F099190N/AMEVNLTYHITERHGYIEVPLSLLRKLKISKLISEYSKVLRRTVFVEEDGDATLLTKRLKIAGYEVNLKESERLKQDYFDCLPKFNDAHCRDKQFDGFKTSYEFTIRHIVTIPDKYKVKENTLSAPDEDDITIEVSFSRNGQKLKQQAVERLGITPSLFFECENERYYED*
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