NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24768J34885_10000815

Scaffold JGI24768J34885_10000815


Overview

Basic Information
Taxon OID3300002447 Open in IMG/M
Scaffold IDJGI24768J34885_10000815 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9385
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameCanada: Lake Ontario
CoordinatesLat. (o)43.933506Long. (o)-78.003845Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001957Metagenome / Metatranscriptome611Y
F019762Metagenome / Metatranscriptome228Y
F067423Metagenome / Metatranscriptome125Y
F093229Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
JGI24768J34885_1000081512F001957AGGCGGMNSVDMATNLINRAKNLQEFVVTTDVPENFRFDGVIPFDMEIKEGEISAKVFAVDFDEAVHRFNDWLETCK*
JGI24768J34885_1000081516F019762AGGAMKQLHESVRNTLVEAVIKESEGFRVRMEKHEVLSPKGLFSIDLINETIDKDGKVADTSTYNYFMTKDELQQLAFALTA*
JGI24768J34885_1000081523F067423N/AVLAIPERDVILEAKHPKLKKMYDEYIQALGKYRTFEAIKGNDD*
JGI24768J34885_100008159F093229GAGMKAQSPAEGVLLRKDYGDAKIYNIVCECGDCDHSHEVWVEAEDHGITVTIYTQQKTKWWQQNRWKIIWTLLTRGYVERESVLIMSKQQALNYANVLQLAVKDVEEFRKVKNVKN*
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