NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24751J29686_10069701

Scaffold JGI24751J29686_10069701


Overview

Basic Information
Taxon OID3300002459 Open in IMG/M
Scaffold IDJGI24751J29686_10069701 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)725
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000674Metagenome / Metatranscriptome941Y
F017139Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
JGI24751J29686_100697011F017139GAGMPQFARIFLVAFAAXATSCSSERPQKEAESKEIGRQLTAXYYSCVRTSFASQLPTMVDRNMAMDQAFMVCQTEEAKLQAFENTLTGNPNVGSAAMSVHR
JGI24751J29686_100697012F000674N/ARPRGDQRERYEMNELRSILLRSIFIGPLLLAWAAGAQEHRFEDDPVVAVRENFVACDVLSQLQRVIGNPRFLLAGECEPLRVGDQVRVYARRGPYFCIYPHDRTSPCKWTHEKALSR*
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