NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LO132_10017870

Scaffold LO132_10017870


Overview

Basic Information
Taxon OID3300002465 Open in IMG/M
Scaffold IDLO132_10017870 Open in IMG/M
Source Dataset NameAnoxic frehswater biofilm from Lago dell Orsa, Frasassi caves, Italy
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterPennsylvania State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3121
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Microbialites → Unclassified → Freshwater Lake → Freshwater Lake Biofilm Microbial Communities From Frasassi Caves, Italy In Anoxic Conditions

Source Dataset Sampling Location
Location NameFrasassi Caves, Italy
CoordinatesLat. (o)43.3833Long. (o)12.95Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101429Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
LO132_100178702F101429AGGAMRSVRATFVLRRYRILGALLLALGVGAVIVGLVLPGYKTPQTFTASGPKVSFTEERDYWIDFYLIPPIDEGRAITLTLISSKPGSTWVYLGPFDMETSSLSGQPVVNEMLGQNETGLVIFGRSTKSSIYSLRITSFNSTYSVRVQSTWSSYFAFRYGLVVGAGLIPASLLIIYYDGMMEKRDRMFEAALKDTKATGRHAQPD*
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