NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold metazooDRAFT_1501904

Scaffold metazooDRAFT_1501904


Overview

Basic Information
Taxon OID3300002471 Open in IMG/M
Scaffold IDmetazooDRAFT_1501904 Open in IMG/M
Source Dataset NameFreshwater microbial communities from San Paulo Zoo lake, Brazil - MAY 2013
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6413
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake → Freshwater Microbial Community From Sao Paulo Zoo Lake, Brazil

Source Dataset Sampling Location
Location NameSao Paulo, Brazil
CoordinatesLat. (o)-23.651072Long. (o)-46.620675Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055453Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
metazooDRAFT_150190413F055453N/AMKLKDILLESPTDVVARFYKEAGQAYDRYYNPEDTKYKEQNRRYYAKFFKEWFEDGRVPVFERPTTPAQPEYRNRPKPGQEQSPGYRGLQYTLAAAGLPYDHNVQRYEPNAAKMVAPQVMDGARNSNGQ*
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