NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25132J35274_1000067

Scaffold JGI25132J35274_1000067


Overview

Basic Information
Taxon OID3300002483 Open in IMG/M
Scaffold IDJGI25132J35274_1000067 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26522
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (53.12%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047767Metagenome / Metatranscriptome149N
F056968Metagenome137N
F071407Metagenome / Metatranscriptome122N
F077252Metagenome117N
F084169Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
JGI25132J35274_100006713F071407AGGAGGMAIELKKVQNIETLALGFNYEAVVDLTTDLGSTAGSATAVDIQVGGAAMAGGVYGAALIVDELVTAEVTDGGSAISDATIALGDDGDADGFVDEVDVFSDSGNLGKIFTNNGALLDDGLHVVSAVDLTYNFTGNAPNDAAKGKIRILFKYHPTAGDNFGG*
JGI25132J35274_100006716F047767N/AMNSLVTNLYPRPNGTVSGENLSCATSGSGVSFAAFDSDTKYVMIDVQDNNVIVTFDGSTPTASNGHLLVKEKGLITLSAQAAKAAKFLGVSGASIVHVSQFV*
JGI25132J35274_100006732F077252N/AMKTLQVGEVSEAMELLMMAQNYQDQVDLITVKITRLLGGVKDDLIHEIVDQAVLNKESIQWVVEEIKDWEKYRQEHKVTG*
JGI25132J35274_10000674F084169N/AMSGKGDRNRTSNWDAFYEGYNNVFRPKEPFYKDVQEYESRFRGGNTDSTKVGVTVSPVTVSPPSDVGANPTSSTIETKPFKADPIKHDIRRIF*
JGI25132J35274_10000675F056968AGGAGMNKNFELVYKSLDTITPDWQTVLVATITEDGFEYDIFNKMEEEHFHENLAVLLALVSKKSMQELERIDWSDN*
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Institute for Fundamental Biomedical Research
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