NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25132J35274_1000548

Scaffold JGI25132J35274_1000548


Overview

Basic Information
Taxon OID3300002483 Open in IMG/M
Scaffold IDJGI25132J35274_1000548 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10033
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000479Metagenome / Metatranscriptome1092Y
F001689Metagenome / Metatranscriptome651Y
F002859Metagenome / Metatranscriptome525Y
F048277Metagenome148N
F067200Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
JGI25132J35274_100054815F002859N/AMNLQNHIGISMLVIIRPDLYEYHALPMTDELFWRRVENLRRAALTAEDFEFRLLYYNQMVELMKRCP*
JGI25132J35274_100054819F000479AGGAMSKAVNIIEVLEKAQQSPASVSKRNKQAIVDAYGRALTMQKVLADFIKVNRQLMIDLSMSENANLLHGKDYSLHVSQKLGAKIDXQLVKEKLGEIAYHQCKVPTQYKQIQAMPLSETTVSRNKKATIDEVADFRISA*
JGI25132J35274_10005483F001689N/AMKLKKEYEMTFKEGLRLGIRLTQAKAYIQNARDAKRLGDDAMAELYMGFAKDWNDLARNAGRKFTPIAAHEPEQPAFDFGDVEMQEHLSKLPHQLKETG*
JGI25132J35274_10005486F067200AGAAGMKTDTIMPKFKSYRPFKADWKYEKKCCKECDKEYLTDNMMGREEGKFIYVWYCLRCYNSLQKS*
JGI25132J35274_10005487F048277GGAGGMFHFWHILAIVGVFVLGFILGRLSMKRKYEAKVEELENRKENIEWAARHH*
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Institute for Fundamental Biomedical Research
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