NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25132J35274_1001267

Scaffold JGI25132J35274_1001267


Overview

Basic Information
Taxon OID3300002483 Open in IMG/M
Scaffold IDJGI25132J35274_1001267 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6711
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (95.65%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F023856Metagenome / Metatranscriptome208Y
F038216Metagenome / Metatranscriptome166Y
F056585Metagenome137N
F073499Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
JGI25132J35274_100126710F056585AGGAGMTRETWEMWADEYQEYYEAEDYEGLDDIEVWKKEEQKVIDEVIQALQGVRA*
JGI25132J35274_100126721F038216AGGAMLKQVNYGLHETIEGSHRTLSDAVTMYAIYYSDWSESLEALSQYYDTDEWKDTGYGEDLPRHRELVQRRNAALRNVHEIGHELRSLGLDVDLCEWAIVDEHFEDAA*
JGI25132J35274_10012673F073499AGGAGMMTEQQLEQWLRDNPWKANVIYPAGGIGFMMFVMYTCIQIIDSFLTGSFI*
JGI25132J35274_10012674F001655GGAGGVKQPENDHVKHFGNDGPIGNDAEIIVYYEERGPAEPVLRIPFWYCKDELGLYENFEASVRRTAKALAESYTYWPDGYVHVQTIINQEYVNII*
JGI25132J35274_10012677F023856GGAGGMRCRACDRILEESELTRKDTHGDFLDLCGICLSATASAGVDTETMQYYQYEIFTDDEKYDTLY*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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