NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25132J35274_1001856

Scaffold JGI25132J35274_1001856


Overview

Basic Information
Taxon OID3300002483 Open in IMG/M
Scaffold IDJGI25132J35274_1001856 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5603
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F002858Metagenome / Metatranscriptome525Y
F008696Metagenome / Metatranscriptome329Y
F024320Metagenome / Metatranscriptome206Y
F030067Metagenome / Metatranscriptome186N
F103165Metagenome101N

Sequences

Protein IDFamilyRBSSequence
JGI25132J35274_100185612F030067GGAGGMPRESWEIAHDEYYDDLEAEDYEGLDDISVWKEEEQKIIDELCKRLEKAYNDVL*
JGI25132J35274_100185614F103165AGGAMITFYMCQITGKYFEDFLIAETAERVMDYPNEPLWGLYKTFDGLAVLVDSEVKEAREAVDNDS*
JGI25132J35274_100185615F008696AGGMDNWHSVTINRFSKLDSESLLYIREDSYKAAXAGETIDNPKTGQYWDEFHYASQELRRREITAISDEVD*
JGI25132J35274_10018565F001655AGGAGGVKQPENDHVKHFGNDGPIGNDAEIIVYYEQHGPAEPVLRIPFWFCKDELGLFENFEASVRRTAKALAESYTYWPDGYVHVQTIINQEYVNIV*
JGI25132J35274_10018567F002858AGGAGMAIDEKSIYLVDGGDYQIYCLGYTQARTVTNDIMKADPWGGIPFVFEQDQLEVSFDDKGNVVMPRAVLDKILFIASDELPQAEGEQ*
JGI25132J35274_10018569F024320AGGAMTIDEYALEYGGLDDNSGPAVDPLEHAMVEHLVEFDTEMYRLQSRRKYTGLSYGHLERLMIELHGEHWRDAL*
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