NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI25132J35274_1005216

Scaffold JGI25132J35274_1005216


Overview

Basic Information
Taxon OID3300002483 Open in IMG/M
Scaffold IDJGI25132J35274_1005216 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3287
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021207Metagenome220Y
F029779Metagenome187Y
F105326Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
JGI25132J35274_10052163F021207AGGAGMSKRFKQVNVQHFAALVQEIDISKYTQKEYVEIVEELYMGIFRHNTDGDFVVETLPNEKGNWKVHKPSATKEEVMELIKKGQVIWDKNVI*
JGI25132J35274_10052164F105326AGGAMGQERNLTPTQHWELHQGLWHMLGCDMQLKHKDKTTAIYVDNKARLKYTYSTKGFIKWFPIPKEDKI*
JGI25132J35274_10052169F029779AGGAGMNYEEKYKQLCEALVGIDATERYSHEEIVDYAYKLKDIEEKSYDSKKT*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.