NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25128J35275_1000078

Scaffold JGI25128J35275_1000078


Overview

Basic Information
Taxon OID3300002488 Open in IMG/M
Scaffold IDJGI25128J35275_1000078 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27368
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (81.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007266Metagenome / Metatranscriptome354Y
F016083Metagenome / Metatranscriptome250Y
F086169Metagenome111N

Sequences

Protein IDFamilyRBSSequence
JGI25128J35275_100007811F007266GAGMADTKPISDSSSLNISLPMLIQAIALIGAMVYGYGELNSRISFLEYQVSINEEHISRLESDAKENQNAEIPADIKQNQRIKYLEKEVDRLRGAGF*
JGI25128J35275_100007828F086169AGGAGMSDQQPDWDKITEGKIRHGIAVEAFGKGMELNEDNMRLMEQWVQFIIHGYDGIKDILEQKKALSSEEVKKEIIDKFDGEVVKETDEDYVKNEINKAVKTLGQKDKNKVLYQLKQGNITVDNLQVCLEKIEVMKHF*
JGI25128J35275_10000786F016083N/AMSLYKYTQKEAANLLIGQNGFDVIAEHDTTVVNPDTGSWIAIQALGKDSSGTTEFLKIKVTSNIGDDISSFVNLIPGEILYGNFSGIVNHTDSTAVCIAYRG*
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