NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25128J35275_1003772

Scaffold JGI25128J35275_1003772


Overview

Basic Information
Taxon OID3300002488 Open in IMG/M
Scaffold IDJGI25128J35275_1003772 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4248
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001479Metagenome / Metatranscriptome687Y
F012353Metagenome / Metatranscriptome281N
F034958Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
JGI25128J35275_10037721F001479GGAGMSKEMLFLCDVLTDWCKKNKFPHRCASDLLYSEDTKGRLTGNQVYWLENFIS
JGI25128J35275_10037722F034958AGGAGMKSEIDQMIDNLEVCIDFLGLNDEQTGEVLAATNELGVNVEYFCHEFMEKSSIELHNPDYLNIAVFNATFWEF*
JGI25128J35275_10037723F012353GAGMLYTTGEWKVDPNKDITFPLVRWLFKLFPILDGSEIEINQVDLGDEFAFGFCQQDDEEFLIHVHNRMDLTEYVKTLIHEITHVRQTLDGITDSNAREDEAYHLEETLSKAFWDRYKSGTPNVES*
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