Scaffold BRMGV_1061872

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BRMGV_1061872

Scaffold BRMGV_1061872

Overview

Basic Information
Taxon OID	3300002495 Open in IMG/M
Scaffold ID	BRMGV_1061872 Open in IMG/M
Source Dataset Name	454 Fosmid Sequence
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2050
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → gamma proteobacterium SS-5	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated Sediment → Mangrove Soil → Mangrove Soil Microbial Communities From Bertioga, Brazil, Sampling Enzymes

Source Dataset Sampling Location
Location Name	Bertioga - SP
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)	.3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074893	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
BRMGV_10618722	F074893	AGGAGG	MMASNGLQATANNGALTIRITGPMDLLLTSALREFCHETGAVYRRYIIDLQDVSIVRDSGLALLLMLKRLASRTGATLHVINGSSDLMRRCLRLGISPY*

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