Scaffold JGI25131J35506_1001071

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25131J35506_1001071

Scaffold JGI25131J35506_1001071

Overview

Basic Information
Taxon OID	3300002511 Open in IMG/M
Scaffold ID	JGI25131J35506_1001071 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_1000
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4330
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCGC AAA164-I21	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002415	Metagenome	561	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25131J35506_10010718	F002415	AGG	MALVRVTLGGKRLGYVRNNKAGSTTIINYLGQLLWNEKPTAYSGTNVQNHCGRDSYIGREKGFEAYHKELKDCEIRIAVYRDPIDKIIAGFYYCQEFKPHFNDLDGFLGNYDAYLRRDNYIRIHCRTNTAMLGPDPSIYTHVWNMNEIDTKVLPFLEQLGGGKIQKTRLREHEPRTITEAQKAQAKEVMAIDYENGWCKELISSKI*

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