NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25131J35506_1001463

Scaffold JGI25131J35506_1001463


Overview

Basic Information
Taxon OID3300002511 Open in IMG/M
Scaffold IDJGI25131J35506_1001463 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3603
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003616Metagenome477Y
F004658Metagenome429Y
F020019Metagenome226Y

Sequences

Protein IDFamilyRBSSequence
JGI25131J35506_10014634F004658N/AMPEYLKKVYEFFKANNAAKDVLIGSVSFIAGGFVLDRILKRDEDDDE*
JGI25131J35506_10014636F003616AGGMIWSEKLGHEIGTYNSLGGFRINPKPFIHSTLNTIVTCRICKGTGLNAITHESGLVTLNKCVLCKGIKHRSNRI*
JGI25131J35506_10014639F020019N/AVGVLIQAYFTATIQGGSWLNSIAGFFNIKFPDTLPEWLTKLFTTGWNGIAFWQILQVTAILLVIVEYMQYDRMLKEKDQKPNATSQAVFLIIAIALSLMVFPQTIQKIKEMRILQQ*
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