NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25131J35506_1003108

Scaffold JGI25131J35506_1003108


Overview

Basic Information
Taxon OID3300002511 Open in IMG/M
Scaffold IDJGI25131J35506_1003108 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2408
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011305Metagenome292Y
F034595Metagenome / Metatranscriptome174Y
F038267Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
JGI25131J35506_10031083F011305AGGMRIIILLLALFMIGCDSMSMKPHKTSVTYGVADTEKENGKDSVKESLTVKQEFLWEE*
JGI25131J35506_10031085F034595GAGGMNVNERLENLSKGELINLIKEIKITCESNRSKAKNTFNFILRLIKGEI*
JGI25131J35506_10031086F038267AGGGGGMRVRGFINISEYSKSKRAYMCYPSMCGSMTSTIXWAHKXAKSDTDFALXVLDIAIKEREKVENVIKRFNRRFK*
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