NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25131J35506_1006489

Scaffold JGI25131J35506_1006489


Overview

Basic Information
Taxon OID3300002511 Open in IMG/M
Scaffold IDJGI25131J35506_1006489 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1644
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000423Metagenome / Metatranscriptome1156Y
F005071Metagenome413Y
F011673Metagenome288Y
F017323Metagenome241Y

Sequences

Protein IDFamilyRBSSequence
JGI25131J35506_10064891F017323N/AGESKMSEKTKVFLIIKKTYWSHDGETWFDVSENADTKEKADRAVDALNVLNHDKKVSYLISEVDYVNK*
JGI25131J35506_10064892F000423GAGGMSINKAIFYIKYYAKKHDCVIERKATLDDNCFEGHHKKFGYPYKKYIDVWATEEVNNGEPQYRTASKKWEINEQPTI*
JGI25131J35506_10064893F011673GGAMSNRQSKILPIYLQPRILSAVAYIHVAPCHEIALERINKISRKLSDREMLYVLSLLAFDNLLDLVKDSDDFKKFVSTKRTIH*
JGI25131J35506_10064894F005071AGGAMTQLNTKEKCTLRDLIKIEIKSLTRDGYGQYKYFEDEYCAFLLKLGRKLKLDIQQKIKAKKVYR*
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