NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25131J35506_1029344

Scaffold JGI25131J35506_1029344


Overview

Basic Information
Taxon OID3300002511 Open in IMG/M
Scaffold IDJGI25131J35506_1029344 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)755
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021552Metagenome / Metatranscriptome218Y
F037762Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
JGI25131J35506_10293441F037762N/AMNRTITKGLTITEMSNWKNFERRVAAKVGGKRIPITGRKCLDIDHPFLDIECKYRKSLPAWLFKDAWGQANTGSGIPVIAVGEYNSNNIFTIT
JGI25131J35506_10293442F021552GGAGMIRHLIGKSLSTCTKDILDGTIDEGEVLLICTSTRHPFSDPNHFYDMRWFDSTKEAELLQRLYKQGRIHQPRMLSDSYNHGQEEFLFPYDNYRHKVWYSIKDQALTDIKYEPDYNEGSDYH*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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