NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25133J35611_10033270

Scaffold JGI25133J35611_10033270


Overview

Basic Information
Taxon OID3300002514 Open in IMG/M
Scaffold IDJGI25133J35611_10033270 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1901
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008649Metagenome / Metatranscriptome330Y
F016323Metagenome248Y
F023448Metagenome / Metatranscriptome210Y
F023958Metagenome208Y
F069347Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
JGI25133J35611_100332701F008649N/ALETLMLDVTNTLNHNGFDEVKAVPNNTQFSIRVGYWDRISASLIETMEEYHNVRITETDWEDEDCGTLYRYLVEVVDPDCGYTLNELNELDSNYGGDSYMTEAEFLHESFLEDEGDIVWGVA*
JGI25133J35611_100332703F023958AGGAGMLQLAQLTDIIGAYEKIKVAKSAGLDFWEGLILILFILKDVAIVGGILGTIIWYVKGKK*
JGI25133J35611_100332704F023448GGAMSAANGYNHQTVIDKLIKLNERIAVDPFNDVQEKDLIWCQRLLTDVKESGLVPSKEEFIMANLMWKKYGFLPTNRKSTEENMWKLIDSMLTQENPSKIGAIKMYRRFIDSTLKEAKEMVDAREIKIKRGW*
JGI25133J35611_100332706F069347GGAMKPTTDKRKKNWGDPILDKLMKLKYRINDAYNHRQENDGETKSDKAWVMEEITNLRGGGWLTATKMKVANEMWSKYAG*
JGI25133J35611_100332707F016323GGAGMPGSKKLIDIIDEMNLKEDTTNTMVVGKLNRLASLIFEVDKYSEDVEFVSTIIEDLISSPHHRITELEIERCNRLYKQYKEVK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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