NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold C687J35503_10000410

Scaffold C687J35503_10000410


Overview

Basic Information
Taxon OID3300002530 Open in IMG/M
Scaffold IDC687J35503_10000410 Open in IMG/M
Source Dataset NameSoil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11364
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.534762Long. (o)-107.782602Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006410Metagenome374Y
F012730Metagenome278Y
F106037Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
C687J35503_1000041013F012730AGAAGMRRSLATVDYEEMKGKNFTEIRVDEKLCEVCDKPIRAEEKTVKTIEITDYERYSNLLTRQKAHDRVEVDLEENKIYVYHHDYPGEIHPSCIEKL*
C687J35503_100004104F106037GAGMTKVSCRECYFIKATGADIDHVVRVVKSALDETGVPPKYHINVYKNIYACCGVSGSGVIVEITGPEEEGIRSLDLKVVSKIVEVCEKEGFEHHTFEPLDISRNGA*
C687J35503_100004106F006410GAGGMSVDKPRMSPEKQKEMQERVKERNLILEKIKHHGPSTLDELSKVTSIEKEKLLKHVIAMRQFGKIAIAGERDNQLVYGLPEGEQA*
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