Scaffold JGI25322J35698_1000187

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25322J35698_1000187

Scaffold JGI25322J35698_1000187

Overview

Basic Information
Taxon OID	3300002545 Open in IMG/M
Scaffold ID	JGI25322J35698_1000187 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/37_all
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	81893
Total Scaffold Genes	83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (65.06%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Clay → Unclassified → Deep Surbsurface → Deep Subsurface Microbial Communities From Mt. Terri Underground Rock Laboratory, Switzerland, That Are Autotrophic

Source Dataset Sampling Location
Location Name	Mt. Terri, Switzerland
Coordinates	Lat. (^o)	47.379	Long. (^o)	7.1648	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049077	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25322J35698_100018764	F049077	AGGAGG	MDLDPFFPSMANTVGALLPALISFGIVLARRARSGLGLADQLWVIVVSIALSVALSRVTITPDVTALHFMPGATVALCYLVWCGHYISPGLAFATTYATCLPVDFFLAQLLFGADFNPESIGGAGWRDGLLVFPTLTALAVMYANWRSLHAGGTRLIGFGQQTGGHALDWARGHLKRHGVAGR*

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